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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ChIP-seq
139
ATAC-seq
31
DNase-seq
10
RRBS
4
Hi-C
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
195
DNA binding
171
DNA accessibility
11
DNA methylation
Transcription
4
3D chromatin structure
Target of assay
153
histone
153
histone modification
78
broad histone mark
75
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
100
May, 2020
59
August, 2017
55
June, 2019
51
May, 2021
46
September, 2018
31
October, 2019
13
July, 2019
9
November, 2017
5
May, 2019
5
September, 2017
4
August, 2021
2
February, 2021
2
November, 2020
Available data
273
bam
265
bigWig
211
bed narrowPeak
118
fastq
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
16
tagAlign
tsv
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
382
Homo sapiens
Biosample type
1479
tissue
532
cell line
382
primary cell
250
in vitro differentiated cells
4
stem cell
Organ
142
epithelium
92
pancreas
33
vasculature
30
kidney
27
blood vessel
23
connective tissue
20
vein
18
brain
12
musculature of body
9
heart
9
liver
5
eye
Project
382
AMP
138
HPAP
108
T1D
Genome assembly (visualization)
285
hg19
189
GRCh38
Lab
349
AMP-T2D consortium
33
Kyle Gaulton, UCSD
Audit category:
36
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
Transcription
files.file_type!
hic
tsv
BIOSAMPLE
ASSAY
382 results
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ChIP-seq
ATAC-seq
DNase-seq
RRBS
Hi-C
DNAme array
FAIRE-seq
pCHi-C
primary cell
CD8-positive, alpha-beta T cell
33
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
22
pancreatic endocrine cell
23
CD4-positive, alpha-beta memory T cell
22
endothelial cell of umbilical vein
17
2
1
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