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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
ChIP-seq
139
ATAC-seq
30
DNase-seq
9
RRBS
6
Hi-C
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
192
DNA binding
170
DNA accessibility
10
DNA methylation
Transcription
6
3D chromatin structure
Target of assay
152
histone
152
histone modification
78
broad histone mark
74
narrow histone mark
31
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
100
May, 2020
59
August, 2017
51
June, 2019
51
May, 2021
46
September, 2018
32
October, 2019
12
July, 2019
9
November, 2017
5
May, 2019
5
September, 2017
4
August, 2021
2
February, 2021
2
November, 2020
1
March, 2020
Available data
269
bam
262
bigWig
208
bed narrowPeak
118
fastq
106
bigBed narrowPeak
48
bed broadPeak
48
bigBed broadPeak
34
bed bed3+
16
tagAlign
tsv
9
bed bedMethyl
9
bigBed bedMethyl
4
hdf5
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
379
Homo sapiens
Biosample type
1453
tissue
534
cell line
379
primary cell
254
in vitro differentiated cells
4
stem cell
Organ
144
epithelium
92
pancreas
35
vasculature
30
kidney
29
blood vessel
23
connective tissue
22
vein
18
brain
12
musculature of body
9
heart
9
liver
eye
Project
379
AMP
141
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
283
hg19
186
GRCh38
Lab
346
AMP-T2D consortium
33
Kyle Gaulton, UCSD
Audit category:
36
inconsistent ontology term
1
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
Transcription
files.file_type!
tsv
organ_slims!
eye
BIOSAMPLE
ASSAY
379 results
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ChIP-seq
ATAC-seq
DNase-seq
RRBS
Hi-C
DNAme array
FAIRE-seq
pCHi-C
primary cell
CD8-positive, alpha-beta T cell
33
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
22
pancreatic endocrine cell
23
CD4-positive, alpha-beta memory T cell
22
endothelial cell of umbilical vein
17
2
2
1
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