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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
163
ChIP-seq
151
ATAC-seq
31
DNase-seq
10
RRBS
6
Hi-C
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
183
DNA accessibility
163
DNA binding
Transcription
11
DNA methylation
6
3D chromatin structure
Target of assay
153
histone
153
histone modification
78
broad histone mark
75
narrow histone mark
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
100
May, 2020
48
May, 2021
47
June, 2019
46
August, 2017
46
September, 2018
29
October, 2019
13
July, 2019
12
February, 2023
6
November, 2017
5
September, 2017
4
May, 2019
3
August, 2021
2
February, 2021
2
November, 2020
1
March, 2020
Available data
258
bigWig
244
bam
211
bed narrowPeak
109
bigBed narrowPeak
102
fastq
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
14
tagAlign
12
tsv
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
364
Homo sapiens
Biosample type
1329
tissue
456
cell line
364
primary cell
219
in vitro differentiated cells
7
stem cell
Organ
123
epithelium
80
pancreas
31
vasculature
27
kidney
26
blood vessel
20
connective tissue
20
vein
15
brain
10
musculature of body
8
liver
7
heart
4
eye
Project
364
AMP
144
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
280
hg19
189
GRCh38
Lab
334
AMP-T2D consortium
30
Kyle Gaulton, UCSD
Audit category:
37
inconsistent ontology term
1
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
Transcription
month_released!
October, 2022
target.investigated_as!
control
BIOSAMPLE
ASSAY
364 results
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ChIP-seq
ATAC-seq
DNase-seq
RRBS
Hi-C
DNAme array
FAIRE-seq
pCHi-C
primary cell
CD8-positive, alpha-beta T cell
30
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
22
pancreatic endocrine cell
23
CD4-positive, alpha-beta memory T cell
22
endothelial cell of umbilical vein
15
2
2
1
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