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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
78
ChIP-seq
22
ATAC-seq
7
WGBS
3
snDrop-seq
1
FAIRE-seq
Assay category
Transcription
78
DNA binding
23
DNA accessibility
7
DNA methylation
Target of assay
69
transcription factor
21
RNA binding protein
16
recombinant protein
9
control
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
406
November, 2017
289
August, 2017
276
October, 2019
151
May, 2020
134
August, 2021
120
May, 2019
117
February, 2021
115
May, 2021
89
February, 2023
80
April, 2019
79
December, 2017
78
November, 2018
74
October, 2018
46
March, 2020
46
September, 2018
41
November, 2019
40
May, 2024
39
July, 2019
38
May, 2022
35
December, 2018
31
June, 2019
25
January, 2019
24
February, 2018
23
October, 2017
11
May, 2023
11
November, 2020
9
September, 2017
8
January, 2018
5
March, 2019
2
December, 2019
1
August, 2018
1
August, 2022
1
October, 2022
Available data
114
bam
96
bed narrowPeak
87
fastq
86
bigWig
84
txt
73
bigBed narrowPeak
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
8
tagAlign
7
bed bedMethyl
7
bigBed bedMethyl
4
bed bedgraph
3
tsv
2
bed bed3
Organism
195
Homo sapiens
Biosample type
112
tissue
78
cell line
4
in vitro differentiated cells
1
primary cell
Organ
92
bone element
51
liver
15
blood
15
bodily fluid
14
artery
14
blood vessel
14
heart
14
vasculature
8
skeleton
8
spleen
6
limb
5
connective tissue
5
pancreas
3
kidney
Project
195
AMP
33
HPAP
Genome assembly (visualization)
93
GRCh38
89
hg19
Lab
195
AMP-T2D consortium
Audit category:
84
inconsistent ontology term
1
inconsistent replicate
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_slims!
Transcription
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
195 results
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Clear Filters
RNA microarray
ChIP-seq
ATAC-seq
WGBS
snDrop-seq
FAIRE-seq
tissue
bone element
84
spleen
6
2
liver
4
pancreas
2
1
body of pancreas
2
+ See 11 more…
cell line
HepG2
45
1
1
GM12878
15
smooth muscle cell of the coronary artery
6
8
iPSC derived cell line
2
in vitro differentiated cells
adipocyte
4
primary cell
osteoblast
1
See all biosamples
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