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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1783ChIP-seq
  • 471ATAC-seq
  • 212DNase-seq
  • 87RNA microarray
  • 40pCHi-C
  • 30Hi-C
  • 28WGBS
  • 21RRBS
  • 10MeRIP-seq
  • 8snATAC-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3snDrop-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1DNAme array
  • 1MPRA
  • 1whole genome sequencing assay
Assay category
  • 1783DNA binding
  • Transcription
  • 696DNA accessibility
  • 50DNA methylation
  • 303D chromatin structure
  • 1DNA sequencing
Target of assay
  • 929histone modification
  • 928histone
  • 514transcription factor
  • 470narrow histone mark
  • 457broad histone mark
  • 340control
  • 114RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 406November, 2017
  • 322August, 2017
  • 284October, 2019
  • 218June, 2019
  • 151May, 2020
  • 139August, 2021
  • 120May, 2019
  • 119February, 2021
  • 115May, 2021
  • 94December, 2017
  • 93February, 2023
  • 87November, 2018
  • 80April, 2019
  • 74October, 2018
  • 46March, 2020
  • 46September, 2018
  • 43July, 2019
  • 41November, 2019
  • 40May, 2024
  • 39May, 2022
  • 35December, 2018
  • 25January, 2019
  • 24February, 2018
  • 23October, 2017
  • 12November, 2020
  • 11May, 2023
  • 11September, 2017
  • 8January, 2018
  • 5March, 2019
  • 2December, 2019
  • 1August, 2018
  • 1August, 2022
  • 1October, 2022
Available data
  • 1898bam
  • 1729bed narrowPeak
  • 1669bigWig
  • 1042bigBed narrowPeak
  • 944fastq
  • 322bed broadPeak
  • 314tagAlign
  • 285bigBed broadPeak
  • 271bed bed3+
  • 89txt
  • 64xls
  • 50tsv
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 20bedpe bed3+
  • 19hic
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 2706Homo sapiens
Biosample type
  • 1516tissue
  • 540cell line
  • 396primary cell
  • 256in vitro differentiated cells
  • 8stem cell
Organ
  • 598liver
  • 343pancreas
  • 262brain
  • 229kidney
  • 227heart
  • 222epithelium
  • 202connective tissue
  • 169vasculature
  • 163blood vessel
  • 115limb
  • 96bone element
  • 90adipose tissue
  • 87musculature of body
  • 83artery
  • 61blood
  • 61bodily fluid
  • 42eye
  • 38nerve
  • 25spleen
  • 23embryo
  • 22vein
  • 18ureter
  • 12skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pituitary gland
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lung
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 2716AMP
  • 147HPAP
  • 139T1D
  • 10LungMap
  • 1ITG
Genome assembly (visualization)
  • 1719hg19
  • 1627GRCh38
  • 5hg18
Lab
  • 2432AMP-T2D consortium
  • 93Kyle Gaulton, UCSD
  • 82Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 28Bing Ren, UCSD
  • 20Karen Mohlke, UNC
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 7Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 211inconsistent ontology term
  • 28inconsistent control
  • 5audit script error
  • 1inconsistent replicate
Audit category:
  • 89missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 4inconsistent assembly
assay_slims!
  • Transcription
BIOSAMPLE
ASSAY

2716 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
pCHi-C
Hi-C
WGBS
RRBS
MeRIP-seq
snATAC-seq
FAIRE-seq
GRO-seq
STARR-seq
Capture-C
snDrop-seq
CRISPR genome editing followed by sgRNA sequencing
DNAme array
MPRA
whole genome sequencing assay
tissue
liver1452021131
islet of Langerhans69571431411
kidney2775131161
bone element84
heart left ventricle35231141
cell line
HepG2378122121
GM12878601
EndoC_BH113191621
Panc11311
smooth muscle cell of the coronary artery68
primary cell
CD8-positive, alpha-beta T cell332
naive thymus-derived CD4-positive, alpha-beta T cell222
pancreatic endocrine cell23
CD4-positive, alpha-beta memory T cell22
endothelial cell of umbilical vein17221
in vitro differentiated cells
adipocyte67811
embryonic stem cell4061
neural progenitor cell2110
pancreatic endoderm181
hepatocyte15
stem cell
hESC31
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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