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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 82ATAC-seq
  • 18ChIP-seq
  • 6snATAC-seq
  • 5STARR-seq
  • 4Hi-C
  • 2Capture-C
  • 1whole genome sequencing assay
Assay category
  • 88DNA accessibility
  • Transcription
  • 18DNA binding
  • 43D chromatin structure
  • 1DNA sequencing
Target of assay
  • 11transcription factor
  • 4control
  • 3histone
  • 3histone modification
  • 2narrow histone mark
  • 1RNA binding protein
  • 1broad histone mark
Date released
  • 101August, 2021
  • 11May, 2023
  • 3February, 2023
  • 2March, 2019
  • 1October, 2017
Available data
  • 82bed narrowPeak
  • 64xls
  • 20bigWig
  • 3bed bedgraph
  • 3hic
  • 3txt
  • 2bed bed3+
  • 2bedpe bed3+
  • 1bed broadPeak
  • 1bedpe
  • 1fastq
  • 1vcf
Organism
  • 118Homo sapiens
Biosample type
  • 86tissue
  • 25cell line
  • 7in vitro differentiated cells
Organ
  • 84kidney
  • 22liver
  • 4connective tissue
  • 4pancreas
Project
  • 118AMP
Genome assembly (visualization)
  • 77GRCh38
  • 26hg19
Lab
  • 82Katalin Susztak, Upenn
  • 28Bing Ren, UCSD
  • 7Struan F.A. Grant, CHOP
  • 1Stephen Parker, UMich
Audit category:
  • 2inconsistent ontology term
assay_slims!
  • Transcription
BIOSAMPLE
ASSAY

118 results

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Clear Filters
ATAC-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
whole genome sequencing assay
tissue
kidney7561
islet of Langerhans22
cell line
HepG218211
HEK293T2
Synthesized DNA1
in vitro differentiated cells
adipocyte11
osteoblast11
Progenitor cell of Hypothalamus (neural progenitor cell)1
embryonic stem cell1
neuron cell of Hypothalamus (neuron)1
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