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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
25
ChIP-seq
6
snATAC-seq
2
Capture-C
2
Hi-C
1
RNA microarray
Assay category
Transcription
82
DNA accessibility
25
DNA binding
2
3D chromatin structure
Target of assay
17
histone
17
histone modification
9
narrow histone mark
8
broad histone mark
8
control
Date released
322
August, 2017
258
October, 2019
218
June, 2019
200
May, 2021
150
May, 2020
140
May, 2022
134
February, 2021
120
May, 2019
112
August, 2021
105
February, 2023
94
December, 2017
91
November, 2017
80
April, 2019
74
October, 2018
46
September, 2018
43
July, 2019
42
March, 2020
40
May, 2024
26
November, 2019
24
February, 2018
23
November, 2018
23
October, 2017
16
January, 2021
11
May, 2023
September, 2017
10
April, 2020
7
August, 2020
7
December, 2018
7
January, 2018
7
January, 2019
6
November, 2020
5
March, 2019
3
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
92
bed narrowPeak
64
xls
34
bam
24
tagAlign
18
bigWig
5
bed bed3+
1
bedpe bed3+
1
hic
Organism
111
Homo sapiens
Biosample type
73
tissue
35
in vitro differentiated cells
cell line
4
primary cell
Organ
71
kidney
5
connective tissue
4
epithelium
4
liver
1
adipose tissue
1
pancreas
Project
112
AMP
Genome assembly (visualization)
90
GRCh38
30
hg19
Lab
71
Katalin Susztak, Upenn
36
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Bing Ren, UCSD
assay_slims!
Transcription
biosample_type!
cell line
month_released!
September, 2017
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
112 results
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Clear Filters
ATAC-seq
ChIP-seq
snATAC-seq
Capture-C
Hi-C
RNA microarray
tissue
kidney
64
6
1
islet of Langerhans
1
subcutaneous adipose tissue
1
in vitro differentiated cells
neural progenitor cell
10
21
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
4
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