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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
Hi-C
Assay category
18
3D chromatin structure
Date released
8
March, 2020
3
October, 2022
2
November, 2019
2
October, 2019
1
August, 2021
1
March, 2019
1
March, 2023
Available data
1690
bam
1516
bigWig
1502
bed narrowPeak
921
bigBed narrowPeak
861
fastq
358
tagAlign
243
bed broadPeak
206
bigBed broadPeak
168
bed bed3+
101
zippedFastqFolder
86
txt
47
tsv
32
bed bedMethyl
32
bigBed bedMethyl
18
hic
16
bedpe bed3+
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
18
Homo sapiens
Biosample type
10
tissue
6
primary cell
in vitro differentiated cells
2
cell line
Organ
7
pancreas
6
epithelium
3
blood vessel
3
heart
3
vasculature
2
liver
2
musculature of body
2
vein
kidney
Project
14
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
17
hg19
1
GRCh38
Lab
12
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
Audit category:
4
audit script error
1
inconsistent ontology term
assay_slims!
Transcription
biosample_type!
in vitro differentiated cells
lab.title!
Maike Sander, UCSD
organ_slims!
kidney
BIOSAMPLE
ASSAY
18 results
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Hi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 3 more…
primary cell
endothelial cell of umbilical vein
2
chondrocytes
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
HepG2
1
See all biosamples
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