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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
140
ChIP-seq
23
ATAC-seq
6
WGBS
3
pCHi-C
2
Capture-C
Assay category
Transcription
140
DNA binding
23
DNA accessibility
6
DNA methylation
Target of assay
69
histone
69
histone modification
40
broad histone mark
39
transcription factor
32
control
28
narrow histone mark
9
RNA binding protein
2
chromatin remodeller
Date released
123
August, 2017
23
October, 2018
10
February, 2023
4
August, 2021
4
February, 2021
4
October, 2019
2
March, 2020
1
August, 2018
1
January, 2018
1
November, 2019
1
October, 2017
Available data
98
bam
98
fastq
79
bigWig
58
bed narrowPeak
22
tagAlign
19
bed bed3+
13
bigBed narrowPeak
5
bed bed3
4
bed bedgraph
bed broadPeak
3
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
tsv
1
bedpe bed3+
Organism
174
Homo sapiens
Biosample type
87
in vitro differentiated cells
86
tissue
primary cell
1
stem cell
Organ
528
liver
253
pancreas
208
brain
191
heart
174
connective tissue
131
kidney
129
blood vessel
129
vasculature
96
bone element
86
adipose tissue
79
artery
79
epithelium
79
limb
61
blood
61
bodily fluid
36
nerve
34
eye
30
musculature of body
24
spleen
23
embryo
12
skeleton
10
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
174
AMP
Genome assembly (visualization)
91
hg19
71
GRCh38
Lab
170
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
4
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
assay_slims!
Transcription
biosample_type!
primary cell
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
174 results
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ChIP-seq
ATAC-seq
WGBS
pCHi-C
Capture-C
in vitro differentiated cells
adipocyte
67
8
1
chondrocyte
5
immature adipocyte
2
osteoblast
1
1
preadipocyte
1
+ See 1 more…
tissue
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
12
1
omental fat pad
11
1
white adipose tissue
12
adipose tissue
2
3
3
1
+ See 2 more…
stem cell
mesenchymal stem cell
1
See all biosamples
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