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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
4
ATAC-seq
2
Capture-C
1
Hi-C
1
pCHi-C
1
snATAC-seq
Assay category
22
DNA binding
5
DNA accessibility
1
3D chromatin structure
Target of assay
10
transcription factor
9
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
15
August, 2017
5
December, 2017
4
February, 2023
2
August, 2021
2
September, 2017
1
February, 2021
1
May, 2022
1
October, 2019
Available data
1629
bam
bed narrowPeak
1408
bigWig
933
bigBed narrowPeak
826
fastq
298
tagAlign
bed broadPeak
236
bed bed3+
236
bigBed broadPeak
89
txt
64
xls
38
tsv
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
31
Homo sapiens
Biosample type
17
tissue
11
in vitro differentiated cells
primary cell
2
cell line
1
stem cell
Organ
12
pancreas
11
connective tissue
4
adipose tissue
2
liver
1
embryo
1
musculature of body
Project
31
AMP
Genome assembly (visualization)
31
hg19
23
GRCh38
Lab
29
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
1
audit script error
Audit category:
13
missing controlled_by
Audit category:
1
inconsistent assembly
assay_slims!
Transcription
biosample_type!
primary cell
files.file_type!
bed broadPeak
bed narrowPeak
BIOSAMPLE
ASSAY
31 results
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Clear Filters
ChIP-seq
ATAC-seq
Capture-C
Hi-C
pCHi-C
snATAC-seq
tissue
islet of Langerhans
11
white adipose tissue
4
liver
1
skeletal muscle tissue
1
in vitro differentiated cells
adipocyte
1
1
1
immature adipocyte
2
Posterior foregut
1
definitive endodermal cell
1
osteoblast
1
+ See 3 more…
cell line
HepG2
1
Panc1
1
stem cell
hESC
1
See all biosamples
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