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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
Transcription
4
DNA accessibility
Date released
3
February, 2023
1
May, 2022
1
October, 2022
Available data
1621
bam
1514
bed narrowPeak
1408
bigWig
933
bigBed narrowPeak
826
fastq
298
tagAlign
273
bed broadPeak
236
bed bed3+
236
bigBed broadPeak
64
xls
38
tsv
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
7
bed bed3
7
bed bedgraph
5
txt
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
4
Homo sapiens
Biosample type
3
in vitro differentiated cells
1
cell line
1
tissue
Organ
bone element
1
musculature of body
Project
5
AMP
Genome assembly (visualization)
4
hg19
Lab
3
Struan F.A. Grant, CHOP
2
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_slims!
Transcription
biosample_type!
primary cell
organ_slims!
bone element
BIOSAMPLE
ASSAY
5 results
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ATAC-seq
MPRA
snATAC-seq
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
tissue
skeletal muscle tissue
1
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