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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ATAC-seq
13
ChIP-seq
8
snATAC-seq
2
Hi-C
Assay category
Transcription
34
DNA accessibility
13
DNA binding
2
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
397
November, 2017
263
August, 2017
252
October, 2019
163
June, 2019
135
August, 2021
117
February, 2021
115
May, 2019
99
February, 2023
94
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
66
May, 2021
51
May, 2020
48
March, 2020
41
November, 2019
40
May, 2024
39
May, 2022
35
December, 2018
30
July, 2019
25
January, 2019
24
February, 2018
23
October, 2017
11
May, 2023
10
April, 2020
10
November, 2020
8
January, 2018
8
January, 2021
6
September, 2017
5
March, 2019
2
December, 2019
1
August, 2018
1
August, 2022
1
October, 2022
0
July, 2018
Available data
39
bam
37
bed narrowPeak
11
bigWig
2
bedpe bed3+
2
hic
Organism
49
Homo sapiens
Biosample type
29
tissue
15
cell line
primary cell
5
in vitro differentiated cells
Organ
43
pancreas
15
epithelium
1
adipose tissue
1
connective tissue
Project
41
AMP
8
T1D
Genome assembly (visualization)
39
hg19
37
GRCh38
Lab
41
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
21
inconsistent ontology term
assay_slims!
Transcription
biosample_type!
primary cell
BIOSAMPLE
ASSAY
49 results
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Clear Filters
ATAC-seq
ChIP-seq
snATAC-seq
Hi-C
tissue
islet of Langerhans
19
4
1
pancreas
4
adipose tissue(adipose white tissue)
1
cell line
EndoC_BH1
1
13
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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