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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ATAC-seq
48
snATAC-seq
47
WGBS
18
ChIP-seq
5
STARR-seq
4
Hi-C
1
whole genome sequencing assay
Assay category
Transcription
97
DNA accessibility
47
DNA methylation
18
DNA binding
4
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
101
May, 2022
33
February, 2021
25
August, 2021
7
August, 2020
3
October, 2022
3
September, 2020
Available data
101
zippedFastqFolder
43
fastq
24
bigWig
14
bed narrowPeak
6
tsv
4
bedpe bed3+
4
hic
3
cool
1
vcf
Organism
172
Homo sapiens
Biosample type
147
primary cell
25
cell line
tissue
Organ
99
epithelium
99
pancreas
22
liver
2
kidney
Project
147
HPAP
25
AMP
Genome assembly (visualization)
18
hg19
10
GRCh38
Lab
171
AMP-T2D consortium
147
Klaus Kaestner, Upenn
104
Kyle Gaulton, UCSD
25
Bing Ren, UCSD
7
Struan F.A. Grant, CHOP
6
Rohit N. Kulkarni, M.D., Ph.D.
1
ITG
0
Mark McCarthy, Oxford
0
Xin Sun, UCSD
Audit category:
30
audit script error
1
inconsistent ontology term
assay_slims!
Transcription
biosample_type!
tissue
files.file_type!
bam
BIOSAMPLE
ASSAY
172 results
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ATAC-seq
snATAC-seq
WGBS
ChIP-seq
STARR-seq
Hi-C
whole genome sequencing assay
primary cell
pancreatic alpha cell
29
31
1
Langerhans cell
48
pancreatic beta cell
16
16
1
pancreatic acinar cell
4
1
cell line
HepG2
18
2
1
1
HEK293T
2
Synthesized DNA
1
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