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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
5
STARR-seq
1
whole genome sequencing assay
Assay category
18
DNA binding
Transcription
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
24
August, 2021
Available data
14
bed narrowPeak
14
bigWig
bedpe bed3+
1
hic
1
vcf
Organism
24
Homo sapiens
Biosample type
24
cell line
tissue
Organ
21
liver
2
kidney
Project
24
AMP
Genome assembly (visualization)
14
hg19
Lab
1080
AMP-T2D consortium
188
Kyle Gaulton, UCSD
144
Klaus Kaestner, Upenn
24
Bing Ren, UCSD
Struan F.A. Grant, CHOP
6
Rohit N. Kulkarni, M.D., Ph.D.
1
ITG
0
Xin Sun, UCSD
Audit category:
1
inconsistent ontology term
assay_slims!
Transcription
biosample_type!
tissue
files.file_type!
bedpe bed3+
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
24 results
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ChIP-seq
STARR-seq
whole genome sequencing assay
cell line
HepG2
18
2
1
HEK293T
2
Synthesized DNA
1
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