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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
Assay category
12
DNA binding
Target of assay
233
histone
233
histone modification
125
broad histone mark
108
narrow histone mark
52
control
45
transcription factor
12
RNA binding protein
7
recombinant protein
3
nucleotide modification
Date released
5
May, 2021
4
June, 2019
1
August, 2021
1
May, 2019
1
November, 2019
Available data
80
bam
79
bed narrowPeak
79
bigWig
fastq
73
bigBed narrowPeak
9
bed broadPeak
9
bigBed broadPeak
1
tar
Organism
12
Homo sapiens
Biosample type
tissue
5
in vitro differentiated cells
5
primary cell
2
cell line
Organ
4
epithelium
2
kidney
1
connective tissue
1
eye
1
heart
1
liver
1
pancreas
Project
12
AMP
Genome assembly (visualization)
7
hg19
6
GRCh38
Lab
6
AMP-T2D consortium
5
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
assay_slims!
Transcription
biosample_type!
tissue
files.file_type!
fastq
BIOSAMPLE
ASSAY
12 results
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ChIP-seq
in vitro differentiated cells
embryonic stem cell
5
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
epithelial cell of proximal tubule
1
kidney epithelial cell
1
retinal pigment epithelial cell
1
cell line
EndoC_BH1
1
HepG2
1
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