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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ChIP-seq
12
ATAC-seq
5
STARR-seq
4
Capture-C
1
whole genome sequencing assay
Assay category
43
DNA binding
Transcription
12
DNA accessibility
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
324
November, 2017
216
May, 2021
127
August, 2017
101
May, 2020
101
May, 2022
65
August, 2021
61
November, 2018
61
October, 2019
57
February, 2021
55
June, 2019
46
December, 2017
46
September, 2018
30
February, 2023
28
December, 2018
24
February, 2018
19
November, 2019
18
January, 2019
15
March, 2020
13
July, 2019
8
January, 2021
8
November, 2020
7
August, 2020
6
January, 2018
5
May, 2019
5
September, 2017
3
September, 2020
1
August, 2018
1
October, 2022
0
October, 2017
Available data
42
bed narrowPeak
34
bam
32
bigWig
24
tagAlign
5
bed bed3+
1
bedpe bed3+
hic
1
vcf
Organism
65
Homo sapiens
Biosample type
tissue
35
in vitro differentiated cells
26
cell line
4
primary cell
Organ
25
liver
6
epithelium
4
connective tissue
2
kidney
2
pancreas
Project
65
AMP
Genome assembly (visualization)
43
hg19
26
GRCh38
Lab
37
AMP-T2D consortium
24
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_slims!
Transcription
biosample_type!
tissue
files.file_type!
hic
BIOSAMPLE
ASSAY
65 results
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ChIP-seq
ATAC-seq
STARR-seq
Capture-C
whole genome sequencing assay
in vitro differentiated cells
neural progenitor cell
21
10
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
18
2
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
primary cell
hepatocyte
4
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