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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ChIP-seq
5
STARR-seq
1
Hi-C
1
whole genome sequencing assay
Assay category
16
DNA binding
Transcription
1
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
23
August, 2021
Available data
12
bed narrowPeak
12
bigWig
1
bedpe bed3+
1
hic
1
vcf
Organism
23
Homo sapiens
Biosample type
23
cell line
tissue
Organ
20
liver
2
kidney
Project
23
AMP
Genome assembly (visualization)
13
hg19
Lab
961
AMP-T2D consortium
147
Klaus Kaestner, Upenn
128
Kyle Gaulton, UCSD
23
Bing Ren, UCSD
Struan F.A. Grant, CHOP
6
Rohit N. Kulkarni, M.D., Ph.D.
1
ITG
0
Xin Sun, UCSD
Audit category:
1
inconsistent ontology term
assay_slims!
Transcription
biosample_type!
tissue
lab.title!
Struan F.A. Grant, CHOP
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
23 results
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ChIP-seq
STARR-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
16
2
1
1
HEK293T
2
Synthesized DNA
1
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