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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
ChIP-seq
Assay category
86
DNA binding
Target of assay
420
transcription factor
389
histone
389
histone modification
198
broad histone mark
190
narrow histone mark
153
control
89
recombinant protein
86
RNA binding protein
34
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
37
November, 2017
21
November, 2018
6
August, 2017
6
January, 2019
5
May, 2021
4
June, 2019
2
December, 2017
2
December, 2018
1
August, 2021
1
May, 2019
1
November, 2019
Available data
80
bam
79
bed narrowPeak
79
bigWig
74
fastq
73
bigBed narrowPeak
9
bed broadPeak
9
bigBed broadPeak
1
tar
Organism
86
Homo sapiens
Biosample type
65
cell line
tissue
11
in vitro differentiated cells
10
primary cell
Organ
56
liver
10
blood
10
bodily fluid
8
epithelium
5
connective tissue
3
brain
2
kidney
2
vasculature
1
blood vessel
1
eye
1
heart
1
pancreas
Project
86
AMP
Genome assembly (visualization)
78
hg19
73
GRCh38
Lab
80
AMP-T2D consortium
5
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
assay_slims!
Transcription
biosample_type!
tissue
month_released!
March, 2019
BIOSAMPLE
ASSAY
86 results
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ChIP-seq
cell line
HepG2
54
GM12878
10
EndoC_BH1
1
in vitro differentiated cells
embryonic stem cell
5
adipocyte
4
hepatocyte
2
primary cell
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
cardiac fibroblast
1
cardiac muscle cell
1
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