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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 964ChIP-seq
  • 271ATAC-seq
  • 56snATAC-seq
  • 48WGBS
  • 34DNase-seq
  • 32pCHi-C
  • 18Hi-C
  • 10RRBS
  • 6MeRIP-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 2HiChIP
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1DNAme array
  • 1FAIRE-seq
  • 1MPRA
  • 1whole genome sequencing assay
Assay category
  • 964DNA binding
  • Transcription
  • 362DNA accessibility
  • 59DNA methylation
  • 183D chromatin structure
  • 1DNA sequencing
Target of assay
  • 420transcription factor
  • 389histone
  • 389histone modification
  • 198broad histone mark
  • 190narrow histone mark
  • 153control
  • 89recombinant protein
  • 86RNA binding protein
  • 34chromatin remodeller
  • 3nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 324November, 2017
  • 216May, 2021
  • 127August, 2017
  • 101May, 2020
  • 101May, 2022
  • 66August, 2021
  • 64October, 2019
  • 61November, 2018
  • 57February, 2021
  • 55June, 2019
  • 46December, 2017
  • 46September, 2018
  • 30February, 2023
  • 28December, 2018
  • 24February, 2018
  • 20November, 2019
  • 18January, 2019
  • 18March, 2020
  • 13July, 2019
  • 8January, 2021
  • 8November, 2020
  • 7August, 2020
  • 6January, 2018
  • 5May, 2019
  • 5September, 2017
  • 4October, 2022
  • 3September, 2020
  • 1August, 2018
  • 1March, 2023
Available data
  • 1002bam
  • 912bigWig
  • 833bed narrowPeak
  • 713fastq
  • 481bigBed narrowPeak
  • 160tagAlign
  • 109bed broadPeak
  • 109bigBed broadPeak
  • 101zippedFastqFolder
  • 66bed bed3+
  • 30tsv
  • 13bedpe bed3+
  • 12hic
  • 11bed bedMethyl
  • 11bigBed bedMethyl
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2ibed
  • 1vcf
Organism
  • 1461Homo sapiens
Biosample type
  • tissue
  • 652primary cell
  • 547cell line
  • 256in vitro differentiated cells
  • 8stem cell
Organ
  • 411liver
  • 310epithelium
  • 253pancreas
  • 113connective tissue
  • 69blood
  • 69bodily fluid
  • 49vasculature
  • 45kidney
  • 43blood vessel
  • 23embryo
  • 23heart
  • 22vein
  • 18brain
  • 14artery
  • 12musculature of body
  • 5eye
  • 1adipose tissue
  • 1bone element
  • 1bone marrow
  • 1mammary gland
Project
  • 1200AMP
  • 147HPAP
  • 115T1D
  • 1ITG
Genome assembly (visualization)
  • 973hg19
  • 785GRCh38
  • 5hg18
Lab
  • 1089AMP-T2D consortium
  • 188Kyle Gaulton, UCSD
  • 147Klaus Kaestner, Upenn
  • 25Bing Ren, UCSD
  • 7Struan F.A. Grant, CHOP
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 1ITG
Audit category:
  • 124inconsistent ontology term
  • 31audit script error
  • 1inconsistent control
  • 1inconsistent replicate
Audit category:
  • 63missing controlled_by
Audit category:
  • 50inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
assay_slims!
  • Transcription
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

1463 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
MeRIP-seq
GRO-seq
STARR-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR genome editing followed by sgRNA sequencing
DNAme array
FAIRE-seq
MPRA
whole genome sequencing assay
primary cell
monocyte851511
pancreatic alpha cell1335311
pancreatic beta cell1323161
Langerhans cell48
CD8-positive, alpha-beta T cell3321
cell line
HepG2378112221
GM12878601
EndoC_BH11519162321
Panc11311
smooth muscle cell of the coronary artery68
in vitro differentiated cells
adipocyte67811
embryonic stem cell4061
neural progenitor cell2110
pancreatic endoderm181
hepatocyte15
stem cell
hESC31
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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