Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1359
ChIP-seq
289
ATAC-seq
87
RNA microarray
30
pCHi-C
28
WGBS
27
snATAC-seq
19
Hi-C
11
RRBS
10
MeRIP-seq
5
STARR-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
whole genome sequencing assay
Assay category
1359
DNA binding
Transcription
323
DNA accessibility
39
DNA methylation
19
3D chromatin structure
1
DNA sequencing
Target of assay
654
histone modification
653
histone
442
transcription factor
337
narrow histone mark
316
broad histone mark
263
control
91
RNA binding protein
89
recombinant protein
32
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
397
November, 2017
240
October, 2019
169
August, 2017
115
May, 2019
112
February, 2021
100
August, 2021
87
February, 2023
80
April, 2019
78
November, 2018
74
October, 2018
51
May, 2020
48
December, 2017
40
May, 2024
38
March, 2020
38
May, 2022
36
November, 2019
35
December, 2018
30
July, 2019
25
January, 2019
23
October, 2017
18
May, 2021
11
May, 2023
10
April, 2020
10
November, 2020
8
January, 2021
5
March, 2019
September, 2017
3
January, 2018
2
December, 2019
1
August, 2022
1
October, 2022
Available data
1456
bam
1388
bed narrowPeak
1273
bigWig
916
bigBed narrowPeak
690
fastq
272
bed broadPeak
258
tagAlign
235
bigBed broadPeak
bed bed3+
86
txt
64
xls
32
tsv
26
bed bedMethyl
26
bigBed bedMethyl
13
hic
12
bedpe bed3+
6
bed bed3
3
tar
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
1874
Homo sapiens
Biosample type
1341
tissue
612
primary cell
544
cell line
231
in vitro differentiated cells
5
stem cell
Organ
567
liver
240
pancreas
217
brain
191
heart
131
kidney
129
blood vessel
129
vasculature
96
bone element
84
connective tissue
83
adipose tissue
79
artery
79
limb
61
blood
61
bodily fluid
58
epithelium
42
musculature of body
36
nerve
34
eye
24
spleen
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1844
AMP
31
T1D
10
LungMap
Genome assembly (visualization)
1095
GRCh38
1071
hg19
Lab
1646
AMP-T2D consortium
82
Katalin Susztak, Upenn
45
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
145
inconsistent ontology term
28
inconsistent control
3
audit script error
1
inconsistent replicate
Audit category:
25
missing controlled_by
Audit category:
32
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
assay_slims!
Transcription
files.file_type!
bed bed3+
month_released!
September, 2017
BIOSAMPLE
ASSAY
1885 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
RNA microarray
pCHi-C
WGBS
snATAC-seq
Hi-C
RRBS
MeRIP-seq
STARR-seq
FAIRE-seq
CRISPR genome editing followed by DNA sequencing
DNase-seq
snDrop-seq
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
whole genome sequencing assay
tissue
liver
142
20
1
3
1
1
islet of Langerhans
46
68
4
7
3
1
4
1
1
kidney
27
75
6
1
1
1
bone element
84
heart left ventricle
35
2
1
4
1
1
+ See 140 more…
cell line
HepG2
378
1
1
1
2
2
1
GM12878
60
1
EndoC_BH1
15
19
1
6
3
2
2
1
smooth muscle cell of the coronary artery
6
8
Panc1
13
+ See 11 more…
See all biosamples
Download