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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1391
ChIP-seq
283
ATAC-seq
180
DNase-seq
87
RNA microarray
31
pCHi-C
28
snATAC-seq
16
Hi-C
16
WGBS
10
MeRIP-seq
5
RRBS
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
FAIRE-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
whole genome sequencing assay
Assay category
1391
DNA binding
Transcription
493
DNA accessibility
21
DNA methylation
16
3D chromatin structure
1
DNA sequencing
Target of assay
666
histone modification
665
histone
455
transcription factor
343
narrow histone mark
322
broad histone mark
270
control
93
RNA binding protein
89
recombinant protein
32
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
397
November, 2017
246
October, 2019
195
August, 2017
163
June, 2019
115
May, 2019
113
February, 2021
100
August, 2021
87
February, 2023
87
November, 2018
80
April, 2019
74
October, 2018
51
May, 2020
48
December, 2017
40
May, 2024
39
May, 2022
38
March, 2020
36
November, 2019
35
December, 2018
July, 2019
25
January, 2019
23
October, 2017
18
May, 2021
11
May, 2023
10
April, 2020
10
November, 2020
8
January, 2021
6
September, 2017
5
March, 2019
3
January, 2018
2
December, 2019
1
August, 2022
1
October, 2022
Available data
1445
bam
1381
bed narrowPeak
1257
bigWig
914
bigBed narrowPeak
696
fastq
272
bed broadPeak
258
tagAlign
235
bigBed broadPeak
208
bed bed3+
86
txt
64
xls
32
tsv
13
hic
12
bed bedMethyl
12
bedpe bed3+
12
bigBed bedMethyl
6
bed bed3
3
tar
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
2056
Homo sapiens
Biosample type
1520
tissue
639
primary cell
547
cell line
256
in vitro differentiated cells
8
stem cell
Organ
573
liver
271
pancreas
241
brain
205
heart
197
kidney
130
blood vessel
130
vasculature
110
limb
96
bone element
90
connective tissue
89
adipose tissue
82
artery
70
musculature of body
61
blood
61
bodily fluid
58
epithelium
38
nerve
37
eye
25
spleen
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
2026
AMP
31
T1D
10
LungMap
Genome assembly (visualization)
1287
GRCh38
1250
hg19
Lab
1828
AMP-T2D consortium
82
Katalin Susztak, Upenn
45
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
146
inconsistent ontology term
28
inconsistent control
4
audit script error
1
inconsistent replicate
Audit category:
39
missing controlled_by
Audit category:
32
inconsistent control read length
8
inconsistent control run_type
2
inconsistent assembly
assay_slims!
Transcription
files.file_type!
csv
month_released!
July, 2019
BIOSAMPLE
ASSAY
2067 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
pCHi-C
snATAC-seq
Hi-C
WGBS
MeRIP-seq
RRBS
STARR-seq
CRISPR genome editing followed by DNA sequencing
snDrop-seq
Capture-C
FAIRE-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
whole genome sequencing assay
tissue
liver
145
20
2
1
1
3
1
islet of Langerhans
71
68
1
4
7
3
4
1
kidney
27
75
13
6
1
bone element
84
body of pancreas
35
4
4
2
+ See 155 more…
cell line
HepG2
378
1
2
2
1
2
1
GM12878
60
1
EndoC_BH1
15
19
1
6
3
2
2
1
Panc1
13
1
1
smooth muscle cell of the coronary artery
6
8
+ See 11 more…
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