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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ChIP-seq
8
ATAC-seq
2
STARR-seq
2
pCHi-C
1
DNase-seq
Assay category
Transcription
16
DNA binding
9
DNA accessibility
Target of assay
11
transcription factor
7
recombinant protein
5
control
Date released
14
February, 2021
11
October, 2019
2
August, 2021
2
March, 2020
Available data
25
bam
20
bed narrowPeak
12
bigWig
6
tagAlign
2
tsv
1
bigBed narrowPeak
Organism
29
Homo sapiens
Biosample type
253
tissue
30
primary cell
29
cell line
Organ
387
liver
61
blood
61
bodily fluid
59
pancreas
45
epithelium
15
kidney
14
artery
14
blood vessel
14
heart
14
vasculature
1
mammary gland
Project
29
AMP
Genome assembly (visualization)
20
GRCh38
20
hg19
Lab
27
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
12
inconsistent ontology term
assay_slims!
Transcription
files.file_type!
bed bedgraph
BIOSAMPLE
ASSAY
29 results
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ChIP-seq
ATAC-seq
STARR-seq
pCHi-C
DNase-seq
cell line
smooth muscle cell of the coronary artery
6
8
RCC 7860 HIF1a re-expression
4
RCC 7860 vector
3
1
RCC 7860 HIF2a over-expression
3
HEK293T
2
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