Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
29
ATAC-seq
6
pCHi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
whole genome sequencing assay
Assay category
Transcription
64
DNA binding
31
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
24
transcription factor
22
histone
22
histone modification
18
control
11
broad histone mark
11
narrow histone mark
7
recombinant protein
2
RNA binding protein
Date released
27
August, 2021
26
October, 2019
18
February, 2021
17
May, 2021
15
November, 2019
7
March, 2020
6
February, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
478
bam
fastq
418
bigWig
404
bed narrowPeak
355
bigBed narrowPeak
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
6
tsv
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
117
Homo sapiens
Biosample type
1271
tissue
491
primary cell
130
in vitro differentiated cells
119
cell line
4
stem cell
Organ
53
pancreas
39
epithelium
25
liver
15
kidney
14
artery
14
blood vessel
14
heart
14
vasculature
1
blood
1
bodily fluid
1
mammary gland
Project
112
AMP
7
T1D
Genome assembly (visualization)
64
hg19
44
GRCh38
Lab
89
AMP-T2D consortium
25
Bing Ren, UCSD
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
Audit category:
50
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
inconsistent assembly
assay_slims!
Transcription
files.file_type!
fastq
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
organ_slims!
large intestine
BIOSAMPLE
ASSAY
119 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
pCHi-C
STARR-seq
CRISPR genome editing followed by DNA sequencing
Hi-C
Capture-C
DNase-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
whole genome sequencing assay
cell line
EndoC_BH1
15
19
3
1
2
2
1
HepG2
18
1
2
2
1
1
Panc1
13
1
1
smooth muscle cell of the coronary artery
6
8
RCC 7860 HIF1a re-expression
4
+ See 11 more…
See all biosamples
Download