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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
404
ChIP-seq
1
Hi-C
1
WGBS
Assay category
404
DNA binding
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
337
transcription factor
82
recombinant protein
63
RNA binding protein
62
control
30
chromatin remodeller
16
histone
histone modification
8
broad histone mark
8
narrow histone mark
2
other context
2
other post-translational modification
Date released
300
November, 2017
61
November, 2018
28
December, 2018
17
January, 2019
Available data
443
bam
406
fastq
381
bigWig
369
bed narrowPeak
335
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
9
tagAlign
6
tsv
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
406
Homo sapiens
Biosample type
406
cell line
200
tissue
88
primary cell
61
in vitro differentiated cells
2
stem cell
Organ
347
liver
59
blood
59
bodily fluid
Project
406
AMP
Genome assembly (visualization)
346
hg19
302
GRCh38
Lab
406
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
assay_slims!
Transcription
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
406 results
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ChIP-seq
Hi-C
WGBS
cell line
HepG2
345
1
1
GM12878
59
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