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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ATAC-seq
9
ChIP-seq
6
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
Hi-C
Assay category
Transcription
20
DNA accessibility
9
DNA binding
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
broad histone mark
6
narrow histone mark
5
control
3
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
17
May, 2021
9
November, 2019
6
November, 2020
3
March, 2020
2
August, 2021
1
February, 2023
1
October, 2019
Available data
11
bam
10
bigWig
9
bed narrowPeak
1
bedpe bed3+
1
bigBed narrowPeak
1
hic
1
tsv
Organism
38
Homo sapiens
Biosample type
212
primary cell
39
cell line
15
in vitro differentiated cells
13
tissue
Organ
377
liver
61
blood
61
bodily fluid
49
pancreas
39
epithelium
15
kidney
14
artery
14
blood vessel
14
heart
14
vasculature
1
mammary gland
Project
37
AMP
2
T1D
Genome assembly (visualization)
12
hg19
9
GRCh38
Lab
33
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
37
inconsistent ontology term
assay_slims!
Transcription
month_released!
May, 2020
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
39 results
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ATAC-seq
ChIP-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
Hi-C
cell line
EndoC_BH1
19
9
6
2
1
1
glomerular visceral epithelial cell
1
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