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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ChIP-seq
4
pCHi-C
2
ATAC-seq
1
WGBS
Assay category
61
DNA binding
Transcription
2
DNA accessibility
1
DNA methylation
Target of assay
57
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
3
control
1
histone
1
histone modification
1
narrow histone mark
Date released
315
November, 2017
61
November, 2018
28
December, 2018
27
August, 2021
26
October, 2019
18
February, 2021
18
January, 2019
17
May, 2021
15
November, 2019
7
March, 2020
6
February, 2023
6
November, 2020
1
January, 2018
1
May, 2020
1
October, 2022
Available data
62
bam
61
fastq
60
bigWig
57
bed narrowPeak
56
bigBed narrowPeak
5
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
68
Homo sapiens
Biosample type
68
cell line
57
tissue
6
in vitro differentiated cells
4
stem cell
1
primary cell
Organ
46
liver
15
blood
15
bodily fluid
3
epithelium
3
pancreas
2
kidney
1
mammary gland
Project
67
AMP
1
T1D
Genome assembly (visualization)
58
GRCh38
57
hg19
Lab
68
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_slims!
Transcription
month_released!
June, 2019
BIOSAMPLE
ASSAY
68 results
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ChIP-seq
pCHi-C
ATAC-seq
WGBS
cell line
HepG2
45
1
GM12878
15
EndoC_BH1
1
2
MCF-7
1
RCC 7860 VHL
1
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