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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1076
ChIP-seq
301
ATAC-seq
147
DNase-seq
87
RNA microarray
27
snATAC-seq
26
WGBS
26
pCHi-C
7
RRBS
4
FAIRE-seq
4
GRO-seq
4
MeRIP-seq
3
snDrop-seq
2
Capture-C
2
Hi-C
Assay category
Transcription
1076
DNA binding
479
DNA accessibility
33
DNA methylation
2
3D chromatin structure
Target of assay
715
histone modification
714
histone
370
narrow histone mark
343
broad histone mark
220
control
143
transcription factor
39
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
237
August, 2017
223
October, 2019
131
June, 2019
108
May, 2019
107
August, 2021
99
February, 2021
93
February, 2023
91
December, 2017
82
November, 2017
80
April, 2019
74
October, 2018
50
May, 2020
49
May, 2021
40
May, 2024
38
May, 2022
26
November, 2018
25
July, 2019
25
March, 2020
25
November, 2019
24
February, 2018
23
October, 2017
11
May, 2023
10
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
January, 2018
5
March, 2019
4
November, 2020
2
December, 2019
1
August, 2022
Available data
1108
bam
1065
bed narrowPeak
934
bigWig
540
bigBed narrowPeak
398
fastq
263
tagAlign
197
bed bed3+
169
bed broadPeak
145
bigBed broadPeak
87
txt
64
xls
27
tsv
22
bed bedMethyl
22
bigBed bedMethyl
bedpe bed3+
13
hic
10
bed bed3
7
bed bedgraph
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
1707
Homo sapiens
Biosample type
1467
tissue
636
primary cell
545
cell line
249
in vitro differentiated cells
8
stem cell
Organ
244
brain
214
pancreas
201
heart
201
liver
184
kidney
177
connective tissue
119
blood vessel
119
vasculature
115
limb
96
bone element
89
adipose tissue
musculature of body
69
artery
38
nerve
37
eye
35
epithelium
25
spleen
23
embryo
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1682
AMP
24
T1D
10
LungMap
Genome assembly (visualization)
1041
GRCh38
937
hg19
4
hg18
Lab
1465
AMP-T2D consortium
82
Katalin Susztak, Upenn
82
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
107
inconsistent ontology term
27
inconsistent control
3
audit script error
Audit category:
32
missing controlled_by
Audit category:
23
inconsistent control read length
1
inconsistent assembly
assay_slims!
Transcription
files.file_type!
bedpe bed3+
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
1716 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
RRBS
FAIRE-seq
GRO-seq
MeRIP-seq
snDrop-seq
Capture-C
Hi-C
tissue
liver
145
20
2
3
1
1
islet of Langerhans
71
68
1
7
4
1
1
4
1
kidney
27
75
13
6
1
1
1
bone element
84
heart left ventricle
35
2
3
4
1
1
+ See 151 more…
in vitro differentiated cells
adipocyte
67
8
1
1
embryonic stem cell
40
6
1
neural progenitor cell
21
10
pancreatic endoderm
18
1
hepatocyte
15
+ See 17 more…
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