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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1113
ChIP-seq
454
ATAC-seq
207
DNase-seq
86
RNA microarray
84
snATAC-seq
68
WGBS
41
pCHi-C
26
Hi-C
21
RRBS
5
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNAme array
Assay category
Transcription
1113
DNA binding
750
DNA accessibility
90
DNA methylation
26
3D chromatin structure
Target of assay
833
histone modification
832
histone
427
narrow histone mark
405
broad histone mark
195
control
87
transcription factor
33
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
251
October, 2019
217
June, 2019
197
August, 2017
152
May, 2021
150
May, 2020
140
May, 2022
130
February, 2021
120
May, 2019
92
February, 2023
91
November, 2017
80
April, 2019
76
August, 2021
51
October, 2018
48
December, 2017
46
September, 2018
43
July, 2019
40
May, 2024
31
March, 2020
25
November, 2018
22
October, 2017
20
November, 2019
16
January, 2021
11
May, 2023
11
September, 2017
10
April, 2020
7
August, 2020
7
December, 2018
7
January, 2019
6
November, 2020
5
March, 2019
3
October, 2022
3
September, 2020
2
December, 2019
1
August, 2022
1
January, 2018
1
March, 2023
Available data
1297
bam
1266
bed narrowPeak
1187
bigWig
660
bigBed narrowPeak
392
fastq
330
tagAlign
259
bed broadPeak
234
bed bed3+
223
bigBed broadPeak
101
zippedFastqFolder
85
txt
64
xls
43
tsv
33
bed bedMethyl
33
bigBed bedMethyl
17
hic
14
bedpe bed3+
6
bed bed3
4
hdf5
3
cool
1
bedpe
1
tagAlign bed3+
1
tar
Organism
2105
Homo sapiens
Biosample type
1461
tissue
652
primary cell
547
cell line
255
in vitro differentiated cells
8
stem cell
Organ
405
pancreas
262
brain
256
epithelium
214
kidney
213
heart
196
liver
155
vasculature
149
blood vessel
115
limb
114
connective tissue
97
bone element
adipose tissue
87
musculature of body
69
artery
42
eye
38
nerve
25
spleen
22
vein
18
ureter
12
skeleton
11
lung
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1823
AMP
147
HPAP
132
T1D
10
LungMap
1
ITG
Genome assembly (visualization)
1200
GRCh38
1184
hg19
Lab
1621
AMP-T2D consortium
181
Kyle Gaulton, UCSD
147
Klaus Kaestner, Upenn
82
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
132
inconsistent ontology term
35
audit script error
27
inconsistent control
Audit category:
58
missing controlled_by
Audit category:
11
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_slims!
Transcription
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
2113 results
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ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNAme array
tissue
liver
145
20
2
3
1
1
1
islet of Langerhans
71
68
1
7
4
3
1
1
4
kidney
27
75
13
6
1
1
1
bone element
84
heart left ventricle
35
2
3
4
1
1
1
+ See 152 more…
primary cell
monocyte
85
15
1
1
pancreatic alpha cell
13
35
31
1
pancreatic beta cell
13
23
16
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
2
1
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