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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
245
ChIP-seq
200
ATAC-seq
56
snATAC-seq
47
WGBS
15
pCHi-C
10
RRBS
6
Hi-C
4
DNase-seq
1
DNAme array
1
FAIRE-seq
Assay category
Transcription
261
DNA accessibility
245
DNA binding
58
DNA methylation
6
3D chromatin structure
Target of assay
215
histone
215
histone modification
113
broad histone mark
102
narrow histone mark
24
control
6
RNA binding protein
6
transcription factor
1
chromatin remodeller
Date released
150
May, 2021
101
May, 2022
100
May, 2020
59
August, 2017
46
September, 2018
34
February, 2021
June, 2019
30
October, 2019
12
February, 2023
9
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
3
October, 2022
3
September, 2020
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2020
Available data
312
bigWig
302
bam
248
bed narrowPeak
161
fastq
101
zippedFastqFolder
100
tagAlign
62
bigBed narrowPeak
25
bed broadPeak
25
bigBed broadPeak
18
tsv
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
585
Homo sapiens
Biosample type
1249
tissue
585
primary cell
544
cell line
231
in vitro differentiated cells
5
stem cell
Organ
216
epithelium
191
pancreas
27
vasculature
23
blood vessel
20
vein
17
kidney
10
brain
8
blood
8
bodily fluid
4
connective tissue
3
liver
bone element
1
bone marrow
1
eye
1
heart
1
musculature of body
Project
330
AMP
147
HPAP
107
T1D
1
ITG
Genome assembly (visualization)
323
hg19
231
GRCh38
Lab
297
AMP-T2D consortium
147
Klaus Kaestner, Upenn
140
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
18
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
Transcription
files.file_type!
bed bed3+
month_released!
June, 2019
organ_slims!
bone element
BIOSAMPLE
ASSAY
585 results
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ChIP-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
RRBS
Hi-C
DNase-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
1
1
pancreatic alpha cell
13
35
31
1
pancreatic beta cell
13
23
16
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
2
1
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