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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
ATAC-seq
56
snATAC-seq
47
WGBS
27
ChIP-seq
17
pCHi-C
9
RRBS
6
Hi-C
2
DNase-seq
1
DNAme array
Assay category
Transcription
180
DNA accessibility
57
DNA methylation
27
DNA binding
6
3D chromatin structure
Target of assay
23
control
7
histone
7
histone modification
4
broad histone mark
narrow histone mark
Date released
101
May, 2022
55
May, 2020
34
February, 2021
32
May, 2021
13
August, 2017
12
February, 2023
10
October, 2019
8
January, 2021
8
July, 2019
6
June, 2019
3
October, 2022
1
August, 2021
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2020
Available data
247
bam
bigWig
186
bed narrowPeak
121
fastq
101
zippedFastqFolder
78
bigBed narrowPeak
53
tagAlign
40
bed broadPeak
40
bigBed broadPeak
32
bed bed3+
18
tsv
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
287
Homo sapiens
Biosample type
619
tissue
287
primary cell
129
cell line
109
in vitro differentiated cells
5
stem cell
Organ
121
epithelium
101
pancreas
8
blood
8
bodily fluid
8
kidney
7
connective tissue
7
vasculature
6
blood vessel
6
vein
3
heart
3
liver
musculature of body
2
eye
1
bone element
1
bone marrow
1
brain
Project
137
HPAP
125
AMP
24
T1D
1
ITG
Genome assembly (visualization)
31
hg19
17
GRCh38
Lab
137
Klaus Kaestner, Upenn
125
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
15
inconsistent ontology term
assay_slims!
Transcription
files.file_type!
bigWig
organ_slims!
musculature of body
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
287 results
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ATAC-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
RRBS
Hi-C
DNase-seq
DNAme array
primary cell
pancreatic alpha cell
22
31
6
1
Langerhans cell
48
pancreatic beta cell
13
16
6
1
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
1
CD4-positive, alpha-beta memory T cell
22
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