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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
267
ChIP-seq
198
ATAC-seq
56
snATAC-seq
47
WGBS
25
DNase-seq
15
pCHi-C
9
RRBS
3
Hi-C
1
DNAme array
1
FAIRE-seq
Assay category
Transcription
280
DNA accessibility
267
DNA binding
57
DNA methylation
3
3D chromatin structure
Target of assay
229
histone
229
histone modification
118
broad histone mark
111
narrow histone mark
29
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
150
May, 2021
101
May, 2022
100
May, 2020
59
August, 2017
46
September, 2018
38
June, 2019
33
February, 2021
31
October, 2019
12
February, 2023
11
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
September, 2020
Available data
342
bigWig
336
bam
278
bed narrowPeak
161
fastq
101
zippedFastqFolder
100
tagAlign
94
bigBed narrowPeak
43
bed broadPeak
43
bigBed broadPeak
27
bed bed3+
18
tsv
9
bed bedMethyl
9
bigBed bedMethyl
hic
4
bedpe bed3+
3
cool
3
hdf5
1
tar
Organism
622
Homo sapiens
Biosample type
1439
tissue
622
primary cell
545
cell line
164
in vitro differentiated cells
7
stem cell
Organ
238
epithelium
188
pancreas
33
vasculature
30
kidney
27
blood vessel
connective tissue
20
vein
18
brain
12
musculature of body
9
heart
9
liver
8
blood
8
bodily fluid
5
eye
1
bone element
1
bone marrow
Project
371
AMP
144
HPAP
107
T1D
Genome assembly (visualization)
350
hg19
266
GRCh38
Lab
338
AMP-T2D consortium
144
Klaus Kaestner, Upenn
140
Kyle Gaulton, UCSD
Audit category:
30
inconsistent ontology term
27
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
Transcription
files.file_type!
hic
lab.title!
Xin Sun, UCSD
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
622 results
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ChIP-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
1
1
pancreatic alpha cell
13
35
31
pancreatic beta cell
13
23
16
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
2
1
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