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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
ChIP-seq
72
ATAC-seq
47
WGBS
18
DNase-seq
6
RRBS
2
Hi-C
1
FAIRE-seq
Assay category
Transcription
92
DNA binding
91
DNA accessibility
53
DNA methylation
2
3D chromatin structure
Target of assay
66
histone
66
histone modification
35
narrow histone mark
31
broad histone mark
21
control
5
RNA binding protein
5
transcription factor
Date released
80
May, 2022
35
September, 2018
30
October, 2019
29
August, 2017
20
June, 2019
8
July, 2019
7
August, 2020
6
February, 2021
6
November, 2017
5
May, 2019
5
September, 2017
4
August, 2021
3
September, 2020
Available data
132
bam
121
bigWig
106
bed narrowPeak
91
fastq
80
zippedFastqFolder
61
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
6
tsv
hic
4
bedpe bed3+
4
tagAlign
3
cool
2
hdf5
1
tar
Organism
238
Homo sapiens
Biosample type
238
primary cell
44
cell line
22
in vitro differentiated cells
13
tissue
Organ
238
epithelium
188
pancreas
33
vasculature
30
kidney
27
blood vessel
24
connective tissue
20
vein
18
brain
12
musculature of body
9
heart
9
liver
8
blood
8
bodily fluid
5
eye
1
bone element
1
bone marrow
Project
142
AMP
96
HPAP
Genome assembly (visualization)
115
GRCh38
112
hg19
Lab
142
AMP-T2D consortium
96
Klaus Kaestner, Upenn
Audit category:
9
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
assay_slims!
Transcription
files.file_type!
hic
BIOSAMPLE
ASSAY
238 results
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ChIP-seq
ATAC-seq
WGBS
DNase-seq
RRBS
Hi-C
FAIRE-seq
primary cell
pancreatic alpha cell
13
35
31
pancreatic beta cell
13
23
16
endothelial cell of umbilical vein
17
2
1
pancreatic acinar cell
8
9
pancreatic ductal cell
13
4
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