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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ATAC-seq
174
ChIP-seq
56
snATAC-seq
47
WGBS
28
DNase-seq
17
pCHi-C
10
Hi-C
9
RRBS
1
DNAme array
1
FAIRE-seq
Assay category
Transcription
285
DNA accessibility
174
DNA binding
57
DNA methylation
10
3D chromatin structure
Target of assay
137
histone
137
histone modification
71
broad histone mark
66
narrow histone mark
28
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
101
May, 2022
100
May, 2020
67
May, 2021
47
August, 2017
47
June, 2019
46
September, 2018
35
February, 2021
32
October, 2019
12
February, 2023
12
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
3
October, 2022
3
September, 2020
2
November, 2020
1
March, 2020
1
March, 2023
Available data
353
bigWig
349
bam
289
bed narrowPeak
161
fastq
103
bigBed narrowPeak
101
zippedFastqFolder
tagAlign
46
bed broadPeak
46
bigBed broadPeak
32
bed bed3+
18
tsv
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
543
Homo sapiens
Biosample type
1108
tissue
543
primary cell
519
cell line
209
in vitro differentiated cells
8
stem cell
Organ
239
epithelium
191
pancreas
35
vasculature
30
kidney
29
blood vessel
24
connective tissue
22
vein
18
brain
12
musculature of body
heart
8
blood
8
bodily fluid
5
eye
5
liver
1
bone element
1
bone marrow
Project
371
AMP
147
HPAP
24
T1D
1
ITG
Genome assembly (visualization)
269
hg19
180
GRCh38
Lab
338
AMP-T2D consortium
147
Klaus Kaestner, Upenn
57
Kyle Gaulton, UCSD
1
ITG
Audit category:
37
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_slims!
Transcription
files.file_type!
tagAlign
lab.title!
Struan F.A. Grant, CHOP
organ_slims!
heart
BIOSAMPLE
ASSAY
543 results
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Clear Filters
ATAC-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
35
13
31
1
pancreatic beta cell
23
13
16
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
2
33
1
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
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