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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
DNase-seq
1
pCHi-C
Assay category
11
DNA accessibility
Transcription
Date released
10
June, 2019
July, 2019
1
February, 2021
1
November, 2020
Available data
236
bigWig
225
bam
189
bed narrowPeak
96
tagAlign
70
fastq
48
bigBed narrowPeak
27
bed broadPeak
27
bigBed broadPeak
21
zippedFastqFolder
12
bed bed3+
12
tsv
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
12
Homo sapiens
Biosample type
205
tissue
25
in vitro differentiated cells
12
primary cell
3
cell line
3
stem cell
Organ
epithelium
10
kidney
7
connective tissue
6
vasculature
5
brain
5
liver
4
blood vessel
3
heart
2
vein
1
eye
1
musculature of body
Project
12
AMP
Genome assembly (visualization)
11
GRCh38
11
hg19
Lab
12
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_slims!
Transcription
month_released!
July, 2019
organ_slims!
epithelium
BIOSAMPLE
ASSAY
12 results
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DNase-seq
pCHi-C
primary cell
cardiac fibroblast
3
osteoblast
1
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain pericyte
1
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