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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
ChIP-seq
32
ATAC-seq
6
WGBS
Assay category
Transcription
53
DNA binding
32
DNA accessibility
6
DNA methylation
Target of assay
37
histone
37
histone modification
21
narrow histone mark
16
broad histone mark
14
control
2
RNA binding protein
2
transcription factor
Date released
35
September, 2018
29
August, 2017
7
August, 2020
6
February, 2021
6
November, 2017
5
September, 2017
3
September, 2020
Available data
132
bam
121
bigWig
106
bed narrowPeak
91
fastq
80
zippedFastqFolder
61
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
6
tsv
5
hic
4
bedpe bed3+
4
tagAlign
3
cool
2
hdf5
1
tar
Organism
91
Homo sapiens
Biosample type
91
primary cell
19
in vitro differentiated cells
Organ
108
pancreas
91
epithelium
9
brain
6
vasculature
3
blood vessel
0
eye
Project
75
AMP
16
HPAP
Genome assembly (visualization)
71
GRCh38
63
hg19
Lab
75
AMP-T2D consortium
16
Klaus Kaestner, Upenn
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
assay_slims!
Transcription
BIOSAMPLE
ASSAY
91 results
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ChIP-seq
ATAC-seq
WGBS
primary cell
pancreatic alpha cell
13
13
6
pancreatic beta cell
13
10
pancreatic ductal cell
13
4
pancreatic acinar cell
8
5
brain microvascular endothelial cell
3
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