Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
117
ChIP-seq
56
snATAC-seq
16
pCHi-C
1
Hi-C
Assay category
Transcription
117
DNA binding
56
DNA accessibility
1
3D chromatin structure
Target of assay
114
histone
114
histone modification
64
broad histone mark
50
narrow histone mark
3
control
Date released
133
May, 2021
27
February, 2021
21
May, 2022
8
January, 2021
1
March, 2023
Available data
117
bigWig
114
bed narrowPeak
84
bam
84
tagAlign
27
fastq
21
zippedFastqFolder
1
hic
Organism
190
Homo sapiens
Biosample type
190
primary cell
152
tissue
49
in vitro differentiated cells
30
cell line
Organ
99
epithelium
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
108
T1D
48
HPAP
33
AMP
1
ITG
Genome assembly (visualization)
117
hg19
85
GRCh38
Lab
AMP-T2D consortium
141
Kyle Gaulton, UCSD
48
Klaus Kaestner, Upenn
1
ITG
Audit category:
27
audit script error
1
inconsistent ontology term
assay_slims!
Transcription
lab.title!
AMP-T2D consortium
organ_slims!
pancreas
BIOSAMPLE
ASSAY
190 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
snATAC-seq
pCHi-C
Hi-C
primary cell
monocyte
84
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
1
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
+ See 13 more…
See all biosamples
Download