Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
267
ChIP-seq
149
ATAC-seq
25
DNase-seq
15
pCHi-C
9
RRBS
8
snATAC-seq
6
Hi-C
1
DNAme array
1
FAIRE-seq
Assay category
267
DNA binding
Transcription
183
DNA accessibility
10
DNA methylation
6
3D chromatin structure
Target of assay
229
histone
229
histone modification
118
broad histone mark
111
narrow histone mark
29
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
150
May, 2021
100
May, 2020
59
August, 2017
46
September, 2018
38
June, 2019
32
October, 2019
12
February, 2023
11
July, 2019
9
November, 2017
8
January, 2021
5
May, 2019
5
September, 2017
4
August, 2021
1
March, 2020
1
March, 2023
Available data
336
bam
332
bigWig
278
bed narrowPeak
118
fastq
100
tagAlign
94
bigBed narrowPeak
43
bed broadPeak
43
bigBed broadPeak
27
bed bed3+
12
tsv
9
bed bedMethyl
9
bigBed bedMethyl
3
hdf5
3
hic
1
bedpe bed3+
1
tar
Organism
481
Homo sapiens
Biosample type
1460
tissue
547
cell line
481
primary cell
168
in vitro differentiated cells
7
stem cell
Organ
144
epithelium
92
pancreas
35
vasculature
30
kidney
29
blood vessel
connective tissue
22
vein
18
brain
12
musculature of body
9
heart
9
liver
8
blood
8
bodily fluid
5
eye
1
bone element
1
bone marrow
Project
373
AMP
107
T1D
1
ITG
Genome assembly (visualization)
352
hg19
257
GRCh38
Lab
340
AMP-T2D consortium
Klaus Kaestner, Upenn
140
Kyle Gaulton, UCSD
1
ITG
Audit category:
30
inconsistent ontology term
1
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
Transcription
lab.title!
Klaus Kaestner, Upenn
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
481 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
pCHi-C
RRBS
snATAC-seq
Hi-C
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
1
1
CD8-positive, alpha-beta T cell
33
2
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
22
1
pancreatic endocrine cell
23
CD4-positive, alpha-beta memory T cell
22
+ See 64 more…
See all biosamples
Download