Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
267
ChIP-seq
198
ATAC-seq
56
snATAC-seq
47
WGBS
25
DNase-seq
15
pCHi-C
9
Hi-C
9
RRBS
1
DNAme array
1
FAIRE-seq
Assay category
Transcription
280
DNA accessibility
267
DNA binding
57
DNA methylation
9
3D chromatin structure
Target of assay
229
histone
229
histone modification
118
broad histone mark
111
narrow histone mark
29
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
150
May, 2021
101
May, 2022
100
May, 2020
59
August, 2017
46
September, 2018
38
June, 2019
33
February, 2021
32
October, 2019
12
February, 2023
11
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
October, 2022
3
September, 2020
1
March, 2020
1
March, 2023
Available data
342
bigWig
336
bam
278
bed narrowPeak
161
fastq
101
zippedFastqFolder
100
tagAlign
94
bigBed narrowPeak
43
bed broadPeak
43
bigBed broadPeak
27
bed bed3+
18
tsv
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
1
tar
Organism
628
Homo sapiens
Biosample type
1256
tissue
628
primary cell
533
cell line
165
in vitro differentiated cells
7
stem cell
Organ
243
epithelium
191
pancreas
35
vasculature
30
kidney
29
blood vessel
connective tissue
22
vein
18
brain
12
musculature of body
heart
9
liver
8
blood
8
bodily fluid
5
eye
1
bone element
1
bone marrow
Project
373
AMP
147
HPAP
107
T1D
1
ITG
Genome assembly (visualization)
355
hg19
267
GRCh38
Lab
340
AMP-T2D consortium
147
Klaus Kaestner, Upenn
140
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
30
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
Transcription
lab.title!
Struan F.A. Grant, CHOP
organ_slims!
connective tissue
heart
BIOSAMPLE
ASSAY
628 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
1
1
pancreatic alpha cell
13
35
31
1
pancreatic beta cell
13
23
16
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
2
1
+ See 65 more…
See all biosamples
Download