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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
265
ChIP-seq
200
ATAC-seq
56
snATAC-seq
47
WGBS
28
DNase-seq
17
pCHi-C
10
Hi-C
9
RRBS
1
DNAme array
1
FAIRE-seq
Assay category
Transcription
285
DNA accessibility
265
DNA binding
57
DNA methylation
10
3D chromatin structure
Target of assay
235
histone
235
histone modification
122
broad histone mark
113
narrow histone mark
30
control
9
RNA binding protein
transcription factor
1
chromatin remodeller
Date released
151
May, 2021
101
May, 2022
100
May, 2020
57
August, 2017
46
September, 2018
44
June, 2019
35
February, 2021
32
October, 2019
12
February, 2023
12
July, 2019
8
January, 2021
7
August, 2020
6
November, 2017
5
September, 2017
4
August, 2021
4
May, 2019
3
October, 2022
3
September, 2020
2
November, 2020
1
March, 2020
1
March, 2023
Available data
344
bigWig
340
bam
280
bed narrowPeak
156
fastq
101
zippedFastqFolder
100
tagAlign
94
bigBed narrowPeak
41
bed broadPeak
41
bigBed broadPeak
32
bed bed3+
18
tsv
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
634
Homo sapiens
Biosample type
1264
tissue
634
primary cell
200
in vitro differentiated cells
176
cell line
8
stem cell
Organ
238
epithelium
191
pancreas
33
vasculature
28
blood vessel
28
kidney
23
connective tissue
22
vein
15
brain
12
musculature of body
9
liver
8
blood
8
bodily fluid
heart
4
eye
1
bone element
1
bone marrow
Project
378
AMP
147
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
359
hg19
270
GRCh38
Lab
345
AMP-T2D consortium
147
Klaus Kaestner, Upenn
141
Kyle Gaulton, UCSD
1
ITG
Audit category:
35
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
Transcription
lab.title!
Struan F.A. Grant, CHOP
organ_slims!
heart
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
634 results
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ChIP-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
1
1
pancreatic alpha cell
13
35
31
1
pancreatic beta cell
13
23
16
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
2
1
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