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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ChIP-seq
158
ATAC-seq
35
snATAC-seq
17
pCHi-C
10
Hi-C
9
RRBS
6
WGBS
5
DNase-seq
1
DNAme array
1
FAIRE-seq
Assay category
Transcription
199
DNA accessibility
195
DNA binding
16
DNA methylation
10
3D chromatin structure
Target of assay
180
histone
180
histone modification
98
broad histone mark
82
narrow histone mark
11
control
4
RNA binding protein
4
transcription factor
Date released
151
May, 2021
May, 2022
100
May, 2020
August, 2017
June, 2019
46
September, 2018
35
February, 2021
32
October, 2019
13
July, 2019
12
February, 2023
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
October, 2022
3
September, 2020
2
November, 2020
1
March, 2020
1
March, 2023
Available data
266
bigWig
244
bam
215
bed narrowPeak
103
fastq
88
tagAlign
43
bigBed narrowPeak
18
tsv
11
bed bed3+
11
bed broadPeak
11
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
437
Homo sapiens
Biosample type
1153
tissue
547
cell line
437
primary cell
188
in vitro differentiated cells
8
stem cell
Organ
114
epithelium
70
pancreas
31
vasculature
27
blood vessel
22
vein
17
kidney
13
brain
8
blood
8
bodily fluid
7
connective tissue
7
liver
1
bone element
1
bone marrow
1
eye
1
heart
1
musculature of body
Project
282
AMP
108
T1D
46
HPAP
1
ITG
Genome assembly (visualization)
287
hg19
195
GRCh38
Lab
249
AMP-T2D consortium
141
Kyle Gaulton, UCSD
46
Klaus Kaestner, Upenn
1
ITG
Audit category:
31
audit script error
18
inconsistent ontology term
Audit category:
32
missing controlled_by
assay_slims!
Transcription
month_released!
August, 2017
June, 2019
May, 2022
BIOSAMPLE
ASSAY
437 results
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ChIP-seq
ATAC-seq
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
DNase-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
1
1
CD8-positive, alpha-beta T cell
33
2
1
Langerhans cell
27
naive thymus-derived CD4-positive, alpha-beta T cell
2
22
1
CD4-positive, alpha-beta memory T cell
22
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