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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
244
ChIP-seq
200
ATAC-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
7
DNase-seq
1
DNAme array
1
FAIRE-seq
Assay category
Transcription
264
DNA accessibility
244
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
215
histone
215
histone modification
113
broad histone mark
102
narrow histone mark
23
control
6
RNA binding protein
6
transcription factor
1
chromatin remodeller
Date released
151
May, 2021
101
May, 2022
100
May, 2020
59
August, 2017
June, 2019
46
September, 2018
35
February, 2021
32
October, 2019
13
July, 2019
12
February, 2023
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
August, 2021
3
October, 2022
3
September, 2020
2
November, 2020
1
March, 2020
1
March, 2023
Available data
309
bigWig
298
bam
245
bed narrowPeak
161
fastq
101
zippedFastqFolder
96
tagAlign
62
bigBed narrowPeak
25
bed broadPeak
25
bigBed broadPeak
18
tsv
10
bed bedMethyl
10
bigBed bedMethyl
8
bed bed3+
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
593
Homo sapiens
Biosample type
1314
tissue
593
primary cell
431
cell line
221
in vitro differentiated cells
8
stem cell
Organ
219
epithelium
191
pancreas
31
vasculature
27
blood vessel
22
vein
17
kidney
13
brain
8
blood
8
bodily fluid
7
connective tissue
3
liver
1
bone element
1
bone marrow
1
eye
1
heart
1
musculature of body
Project
337
AMP
147
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
331
hg19
234
GRCh38
Lab
304
AMP-T2D consortium
147
Klaus Kaestner, Upenn
141
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
18
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
Transcription
month_released!
August, 2021
June, 2019
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
593 results
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ChIP-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
1
1
pancreatic alpha cell
13
35
31
1
pancreatic beta cell
13
23
16
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
2
1
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