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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
270
ChIP-seq
200
ATAC-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
6
Hi-C
1
DNAme array
1
FAIRE-seq
1
RRBS
Assay category
Transcription
288
DNA accessibility
270
DNA binding
49
DNA methylation
6
3D chromatin structure
Target of assay
234
histone
234
histone modification
122
broad histone mark
112
narrow histone mark
29
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
151
May, 2021
101
May, 2022
100
May, 2020
59
August, 2017
55
June, 2019
46
September, 2018
35
February, 2021
32
October, 2019
July, 2019
12
February, 2023
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
October, 2022
3
September, 2020
2
November, 2020
1
March, 2020
1
March, 2023
Available data
348
bam
346
bigWig
289
bed narrowPeak
152
fastq
103
bigBed narrowPeak
101
zippedFastqFolder
100
tagAlign
43
bed broadPeak
43
bigBed broadPeak
31
bed bed3+
18
tsv
6
hic
4
bedpe bed3+
3
cool
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
630
Homo sapiens
Biosample type
1438
tissue
630
primary cell
256
in vitro differentiated cells
232
cell line
8
stem cell
Organ
229
epithelium
191
pancreas
27
kidney
26
vasculature
24
blood vessel
22
connective tissue
22
vein
11
musculature of body
8
blood
8
bodily fluid
8
heart
7
liver
5
brain
4
eye
1
bone element
1
bone marrow
Project
374
AMP
147
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
352
hg19
278
GRCh38
Lab
341
AMP-T2D consortium
147
Klaus Kaestner, Upenn
141
Kyle Gaulton, UCSD
1
ITG
Audit category:
41
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
Transcription
month_released!
July, 2019
November, 2017
BIOSAMPLE
ASSAY
630 results
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ChIP-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
DNAme array
FAIRE-seq
RRBS
primary cell
monocyte
85
15
1
1
pancreatic alpha cell
13
35
31
1
pancreatic beta cell
13
23
16
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
2
1
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