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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
244
ChIP-seq
160
ATAC-seq
35
snATAC-seq
17
pCHi-C
9
Hi-C
9
RRBS
7
DNase-seq
6
WGBS
1
DNAme array
1
FAIRE-seq
Assay category
Transcription
244
DNA binding
203
DNA accessibility
16
DNA methylation
9
3D chromatin structure
Target of assay
215
histone
215
histone modification
113
broad histone mark
102
narrow histone mark
23
control
6
RNA binding protein
6
transcription factor
1
chromatin remodeller
Date released
151
May, 2021
May, 2022
100
May, 2020
59
August, 2017
June, 2019
46
September, 2018
35
February, 2021
31
October, 2019
12
February, 2023
11
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
3
October, 2022
3
September, 2020
2
November, 2020
1
March, 2020
1
March, 2023
Available data
308
bigWig
297
bam
244
bed narrowPeak
161
fastq
96
tagAlign
62
bigBed narrowPeak
25
bed broadPeak
25
bigBed broadPeak
18
tsv
9
bed bedMethyl
9
bigBed bedMethyl
7
bed bed3+
6
hic
4
bedpe bed3+
3
cool
3
hdf5
1
bed bed3
1
tar
Organism
489
Homo sapiens
Biosample type
1181
tissue
489
primary cell
241
in vitro differentiated cells
160
cell line
8
stem cell
Organ
143
epithelium
111
pancreas
31
vasculature
27
blood vessel
22
vein
17
kidney
13
brain
8
blood
8
bodily fluid
7
connective tissue
liver
1
bone element
1
bone marrow
1
eye
1
heart
1
musculature of body
Project
334
AMP
108
T1D
46
HPAP
1
ITG
Genome assembly (visualization)
328
hg19
233
GRCh38
Lab
301
AMP-T2D consortium
141
Kyle Gaulton, UCSD
46
Klaus Kaestner, Upenn
1
ITG
Audit category:
31
audit script error
17
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
Transcription
month_released!
June, 2019
May, 2022
organ_slims!
liver
BIOSAMPLE
ASSAY
489 results
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ChIP-seq
ATAC-seq
snATAC-seq
pCHi-C
Hi-C
RRBS
DNase-seq
WGBS
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
1
1
CD8-positive, alpha-beta T cell
33
2
1
pancreatic alpha cell
13
13
1
6
Langerhans cell
27
naive thymus-derived CD4-positive, alpha-beta T cell
2
22
1
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