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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
248
ChIP-seq
198
ATAC-seq
56
snATAC-seq
47
WGBS
15
pCHi-C
9
Hi-C
9
RRBS
6
DNase-seq
1
DNAme array
1
FAIRE-seq
Assay category
Transcription
261
DNA accessibility
248
DNA binding
57
DNA methylation
9
3D chromatin structure
Target of assay
218
histone
218
histone modification
114
broad histone mark
104
narrow histone mark
24
control
6
RNA binding protein
6
transcription factor
1
chromatin remodeller
Date released
150
May, 2021
101
May, 2022
100
May, 2020
59
August, 2017
46
September, 2018
June, 2019
33
February, 2021
32
October, 2019
12
February, 2023
11
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
October, 2022
3
September, 2020
1
March, 2020
1
March, 2023
Available data
309
bigWig
298
bam
245
bed narrowPeak
161
fastq
101
zippedFastqFolder
100
tagAlign
61
bigBed narrowPeak
24
bed broadPeak
24
bigBed broadPeak
18
tsv
9
bed bedMethyl
9
bigBed bedMethyl
8
bed bed3+
6
hic
4
bedpe bed3+
3
cool
3
hdf5
1
tar
Organism
590
Homo sapiens
Biosample type
1298
tissue
590
primary cell
547
cell line
168
in vitro differentiated cells
7
stem cell
Organ
223
epithelium
191
pancreas
31
vasculature
27
blood vessel
22
vein
17
kidney
13
brain
8
blood
8
bodily fluid
connective tissue
7
liver
1
bone element
1
bone marrow
1
eye
1
heart
1
musculature of body
Project
335
AMP
147
HPAP
107
T1D
1
ITG
Genome assembly (visualization)
328
hg19
234
GRCh38
Lab
302
AMP-T2D consortium
147
Klaus Kaestner, Upenn
140
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
17
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
Transcription
month_released!
June, 2019
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
590 results
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ChIP-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
1
1
pancreatic alpha cell
13
35
31
1
pancreatic beta cell
13
23
16
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
2
1
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