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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
253
ChIP-seq
200
ATAC-seq
56
snATAC-seq
47
WGBS
27
DNase-seq
17
pCHi-C
10
RRBS
6
Hi-C
1
DNAme array
Assay category
Transcription
283
DNA accessibility
253
DNA binding
58
DNA methylation
6
3D chromatin structure
Target of assay
219
histone
219
histone modification
113
broad histone mark
106
narrow histone mark
27
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
151
May, 2021
101
May, 2022
100
May, 2020
59
August, 2017
53
June, 2019
46
September, 2018
35
February, 2021
12
February, 2023
11
July, 2019
11
October, 2019
8
January, 2021
7
August, 2020
November, 2017
5
May, 2019
5
September, 2017
4
August, 2021
3
October, 2022
3
September, 2020
2
November, 2020
1
March, 2023
Available data
331
bigWig
326
bam
274
bed narrowPeak
152
fastq
101
zippedFastqFolder
100
tagAlign
88
bigBed narrowPeak
37
bed broadPeak
37
bigBed broadPeak
29
bed bed3+
18
tsv
10
bed bedMethyl
10
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
hdf5
1
bed bed3
Organism
617
Homo sapiens
Biosample type
1348
tissue
617
primary cell
256
in vitro differentiated cells
218
cell line
8
stem cell
Organ
237
epithelium
191
pancreas
30
kidney
29
vasculature
blood vessel
24
connective tissue
22
vein
12
musculature of body
9
brain
9
heart
9
liver
8
blood
8
bodily fluid
5
eye
1
bone element
1
bone marrow
Project
361
AMP
147
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
345
hg19
264
GRCh38
Lab
328
AMP-T2D consortium
147
Klaus Kaestner, Upenn
141
Kyle Gaulton, UCSD
1
ITG
Audit category:
43
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
Transcription
month_released!
November, 2017
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
617 results
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ChIP-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
DNAme array
primary cell
monocyte
85
15
1
1
pancreatic alpha cell
13
35
31
1
pancreatic beta cell
13
23
16
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
2
1
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