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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
121
ChIP-seq
16
pCHi-C
13
ATAC-seq
3
Hi-C
1
DNAme array
Assay category
121
DNA binding
Transcription
13
DNA accessibility
3
3D chromatin structure
1
DNA methylation
Target of assay
118
histone
118
histone modification
66
broad histone mark
52
narrow histone mark
3
control
Date released
151
May, 2021
101
May, 2022
100
May, 2020
59
August, 2017
June, 2019
46
September, 2018
35
February, 2021
32
October, 2019
13
July, 2019
12
February, 2023
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
October, 2022
3
September, 2020
2
November, 2020
1
March, 2020
1
March, 2023
Available data
127
bed narrowPeak
117
bigWig
97
bam
84
tagAlign
3
bedpe bed3+
3
cool
3
hic
Organism
154
Homo sapiens
Biosample type
154
primary cell
48
in vitro differentiated cells
18
cell line
1
tissue
Organ
3
epithelium
3
pancreas
1
bone element
1
bone marrow
1
connective tissue
Project
100
T1D
51
AMP
3
HPAP
Genome assembly (visualization)
133
hg19
97
GRCh38
Lab
133
Kyle Gaulton, UCSD
18
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
1
inconsistent ontology term
assay_slims!
Transcription
month_released!
June, 2019
BIOSAMPLE
ASSAY
154 results
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ChIP-seq
pCHi-C
ATAC-seq
Hi-C
DNAme array
primary cell
monocyte
85
1
13
1
CD8-positive, alpha-beta T cell
33
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
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