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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
269
ChIP-seq
200
ATAC-seq
56
snATAC-seq
47
WGBS
30
DNase-seq
17
pCHi-C
10
Hi-C
9
RRBS
1
DNAme array
1
FAIRE-seq
Assay category
Transcription
287
DNA accessibility
269
DNA binding
57
DNA methylation
10
3D chromatin structure
Target of assay
229
histone
229
histone modification
118
broad histone mark
111
narrow histone mark
30
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
151
May, 2021
101
May, 2022
100
May, 2020
59
August, 2017
46
September, 2018
44
June, 2019
35
February, 2021
32
October, 2019
12
February, 2023
12
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
October, 2022
3
September, 2020
2
November, 2020
1
March, 2020
1
March, 2023
Available data
350
bigWig
346
bam
286
bed narrowPeak
161
fastq
101
zippedFastqFolder
100
bigBed narrowPeak
100
tagAlign
48
bed broadPeak
48
bigBed broadPeak
34
bed bed3+
18
tsv
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
640
Homo sapiens
Biosample type
1472
tissue
640
primary cell
545
cell line
256
in vitro differentiated cells
8
stem cell
Organ
243
epithelium
191
pancreas
35
vasculature
30
kidney
29
blood vessel
24
connective tissue
22
vein
18
brain
musculature of body
9
heart
9
liver
8
blood
8
bodily fluid
5
eye
1
bone element
1
bone marrow
Project
384
AMP
147
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
364
hg19
275
GRCh38
Lab
351
AMP-T2D consortium
147
Klaus Kaestner, Upenn
141
Kyle Gaulton, UCSD
1
ITG
Audit category:
35
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
Transcription
organ_slims!
musculature of body
target.investigated_as!
other context
target.investigated_as!!
other context
BIOSAMPLE
ASSAY
640 results
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ChIP-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
1
1
pancreatic alpha cell
13
35
31
1
pancreatic beta cell
13
23
16
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
2
1
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