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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
ChIP-seq
5
DNase-seq
3
Hi-C
1
RRBS
1
pCHi-C
Assay category
9
DNA binding
5
DNA accessibility
Transcription
3
3D chromatin structure
1
DNA methylation
Target of assay
3
RNA binding protein
3
control
3
histone
3
histone modification
3
narrow histone mark
3
transcription factor
Date released
9
November, 2017
5
June, 2019
4
July, 2019
1
May, 2021
Available data
17
bigWig
14
bam
11
bed broadPeak
11
bed narrowPeak
11
bigBed broadPeak
11
bigBed narrowPeak
9
fastq
8
bed bed3+
3
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
Organism
19
Homo sapiens
Biosample type
341
tissue
19
primary cell
Organ
243
epithelium
191
pancreas
35
vasculature
30
kidney
29
blood vessel
24
connective tissue
22
vein
18
brain
12
musculature of body
9
heart
9
liver
8
blood
8
bodily fluid
5
eye
1
bone element
1
bone marrow
0
pericardium
Project
18
AMP
1
T1D
Genome assembly (visualization)
18
hg19
11
GRCh38
Lab
18
AMP-T2D consortium
1
Kyle Gaulton, UCSD
assay_slims!
Transcription
BIOSAMPLE
ASSAY
19 results
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ChIP-seq
DNase-seq
Hi-C
RRBS
pCHi-C
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
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