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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
87
ChIP-seq
72
ATAC-seq
47
WGBS
18
DNase-seq
7
Hi-C
6
RRBS
1
FAIRE-seq
Assay category
Transcription
91
DNA accessibility
87
DNA binding
53
DNA methylation
7
3D chromatin structure
Target of assay
66
histone
66
histone modification
35
narrow histone mark
31
broad histone mark
21
control
5
RNA binding protein
transcription factor
Date released
80
May, 2022
35
September, 2018
31
October, 2019
29
August, 2017
18
June, 2019
8
July, 2019
7
August, 2020
6
February, 2021
5
September, 2017
4
August, 2021
4
May, 2019
4
November, 2017
3
October, 2022
3
September, 2020
1
March, 2020
Available data
127
bam
116
bigWig
101
bed narrowPeak
89
fastq
80
zippedFastqFolder
56
bigBed narrowPeak
21
bed bed3+
20
bed broadPeak
20
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
tsv
5
hic
4
bedpe bed3+
4
tagAlign
3
cool
2
hdf5
1
tar
Organism
238
Homo sapiens
Biosample type
238
primary cell
44
cell line
19
in vitro differentiated cells
13
tissue
Organ
238
epithelium
191
pancreas
33
vasculature
28
blood vessel
28
kidney
23
connective tissue
22
vein
15
brain
12
musculature of body
9
liver
8
blood
8
bodily fluid
8
heart
4
eye
1
bone element
1
bone marrow
Project
139
AMP
99
HPAP
Genome assembly (visualization)
112
hg19
110
GRCh38
Lab
139
AMP-T2D consortium
99
Klaus Kaestner, Upenn
Audit category:
7
inconsistent ontology term
4
audit script error
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
assay_slims!
Transcription
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
238 results
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ChIP-seq
ATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
FAIRE-seq
primary cell
pancreatic alpha cell
13
35
31
1
pancreatic beta cell
13
23
16
1
endothelial cell of umbilical vein
17
2
2
1
pancreatic acinar cell
8
9
1
pancreatic ductal cell
13
4
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