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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
897
ChIP-seq
260
ATAC-seq
169
DNase-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
21
WGBS
16
Hi-C
11
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
Transcription
897
DNA binding
460
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
184
control
87
transcription factor
28
RNA binding protein
2
chromatin remodeller
2
nucleotide modification
Date released
220
October, 2019
195
August, 2017
163
June, 2019
115
May, 2019
95
February, 2021
82
November, 2017
81
February, 2023
80
April, 2019
74
October, 2018
73
August, 2021
50
May, 2020
48
December, 2017
40
May, 2024
39
May, 2022
31
March, 2020
30
July, 2019
November, 2018
23
October, 2017
21
November, 2019
11
May, 2023
10
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
967
bed narrowPeak
958
bam
832
bigWig
544
bigBed narrowPeak
248
fastq
238
tagAlign
204
bed broadPeak
196
bed bed3+
167
bigBed broadPeak
85
txt
64
xls
26
tsv
19
bed bedMethyl
19
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1515
Homo sapiens
Biosample type
1524
tissue
652
primary cell
486
cell line
in vitro differentiated cells
8
stem cell
Organ
242
brain
207
pancreas
204
heart
184
kidney
180
liver
120
blood vessel
120
vasculature
115
limb
96
bone element
89
connective tissue
88
adipose tissue
75
musculature of body
69
artery
38
nerve
37
eye
18
ureter
16
spleen
13
epithelium
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1490
AMP
24
T1D
10
LungMap
Genome assembly (visualization)
919
GRCh38
820
hg19
Lab
1321
AMP-T2D consortium
82
Katalin Susztak, Upenn
40
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
Transcription
biosample_type!
in vitro differentiated cells
month_released!
November, 2018
BIOSAMPLE
ASSAY
1524 results
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ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
liver
141
20
1
3
1
1
islet of Langerhans
71
68
1
7
4
3
1
4
1
kidney
27
75
13
6
1
1
1
bone element
84
heart left ventricle
35
2
3
1
4
1
1
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